Variant report

Variant	rs6764033
Chromosome Location	chr3:82022078-82022079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11127747	0.83[ASN][1000 genomes]
rs13085470	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4389498	0.83[ASN][1000 genomes]
rs4452351	0.82[ASN][1000 genomes]
rs6790351	0.83[ASN][1000 genomes]
rs7431326	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9826743	0.88[ASN][1000 genomes]
rs9968070	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82018200-82023800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:82018400-82023400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:82018400-82023800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:82021400-82023600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links