Variant report

Variant	rs35785014
Chromosome Location	chr18:13513603-13513604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13512667..13513718-chr18:13539667..13540492,6	MCF-7	breast:
2	chr18:12989904..12992795-chr18:13513289..13515032,2	MCF-7	breast:
3	chr18:13511966..13515054-chr18:13522096..13525894,4	MCF-7	breast:
4	chr18:13513143..13515699-chr18:13615658..13618588,2	MCF-7	breast:
5	chr18:13512015..13513700-chr18:13517381..13520375,2	K562	blood:

Variant related genes	Relation type
ENSG00000266969	Chromatin interaction
ENSG00000267136	Chromatin interaction
ENSG00000101639	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12326936	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162370	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28387969	0.92[EUR][1000 genomes]
rs35045187	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35860883	0.92[EUR][1000 genomes]
rs36094178	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3901208	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71353271	0.92[EUR][1000 genomes]
rs71353272	0.96[EUR][1000 genomes]
rs71353273	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7234036	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9916902	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1827877	chr18:13511622-13523462	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13499600-13539200	Weak transcription	Gastric	stomach
3	chr18:13499800-13514200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr18:13499800-13531000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr18:13500000-13516800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr18:13500400-13517400	Weak transcription	Spleen	Spleen
7	chr18:13501400-13518200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr18:13501600-13525000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr18:13501800-13530600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr18:13502800-13525200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr18:13503000-13517000	Weak transcription	Adipose Nuclei	Adipose
12	chr18:13503000-13519200	Weak transcription	Pancreas	Pancrea
13	chr18:13503200-13514600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr18:13503200-13517200	Weak transcription	Fetal Lung	lung
15	chr18:13503200-13521000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr18:13503400-13517400	Weak transcription	Aorta	Aorta
17	chr18:13505000-13536000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr18:13506000-13515600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr18:13507000-13516200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr18:13507000-13536400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr18:13510200-13515600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr18:13510600-13514000	Enhancers	Fetal Heart	heart
23	chr18:13510800-13514200	Enhancers	Primary hematopoietic stem cells	blood
24	chr18:13511000-13513800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr18:13511000-13514000	Genic enhancers	Fetal Thymus	thymus
26	chr18:13511000-13514200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr18:13511000-13515000	Enhancers	Fetal Muscle Leg	muscle
28	chr18:13511600-13530400	Weak transcription	Colon Smooth Muscle	Colon
29	chr18:13511800-13514000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr18:13512000-13514400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr18:13512000-13518200	Weak transcription	Brain Hippocampus Middle	brain
32	chr18:13512200-13514000	Enhancers	Liver	Liver
33	chr18:13512200-13521600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr18:13512400-13516200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr18:13512600-13516200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr18:13512800-13515400	Enhancers	HepG2	liver
37	chr18:13512800-13518400	Strong transcription	Dnd41	blood
38	chr18:13513000-13513800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr18:13513000-13513800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr18:13513000-13513800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr18:13513000-13514000	Enhancers	Psoas Muscle	Psoas
42	chr18:13513000-13514600	Weak transcription	Primary B cells from cord blood	blood
43	chr18:13513000-13514600	Enhancers	Right Atrium	heart
44	chr18:13513200-13514200	Genic enhancers	Thymus	Thymus
45	chr18:13513200-13516000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr18:13513200-13516600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr18:13513200-13516800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr18:13513200-13516800	Weak transcription	Fetal Stomach	stomach
49	chr18:13513200-13517000	Weak transcription	Brain Germinal Matrix	brain
50	chr18:13513200-13517200	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links