Variant report

Variant	rs9916902
Chromosome Location	chr18:13500285-13500286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13494171..13497555-chr18:13498972..13501246,3	MCF-7	breast:
2	chr18:13217819..13219889-chr18:13500285..13503247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12326936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2162370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[MEX][hapmap];0.92[EUR][1000 genomes]
rs28387969	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35045187	0.96[EUR][1000 genomes]
rs35785014	0.92[EUR][1000 genomes]
rs35860883	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36094178	0.92[EUR][1000 genomes]
rs3901208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs71353271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71353272	0.96[EUR][1000 genomes]
rs71353273	0.81[EUR][1000 genomes]
rs7234036	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[MEX][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13467000-13501000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr18:13467400-13502200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr18:13470800-13501800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr18:13471000-13500400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:13483800-13502600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr18:13487000-13500800	Weak transcription	Colon Smooth Muscle	Colon
8	chr18:13492000-13502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr18:13495200-13502000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr18:13495400-13500400	Weak transcription	Aorta	Aorta
11	chr18:13498400-13501600	Genic enhancers	Dnd41	blood
12	chr18:13498800-13501600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr18:13498800-13503600	Weak transcription	Colonic Mucosa	Colon
14	chr18:13499000-13501400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr18:13499200-13501600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr18:13499200-13505800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr18:13499400-13500400	Genic enhancers	Thymus	Thymus
18	chr18:13499400-13501400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr18:13499400-13505400	Genic enhancers	Fetal Thymus	thymus
20	chr18:13499400-13506000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr18:13499600-13500400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr18:13499600-13500600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr18:13499600-13501800	Enhancers	Lung	lung
24	chr18:13499600-13503400	Enhancers	Liver	Liver
25	chr18:13499600-13503400	Enhancers	Left Ventricle	heart
26	chr18:13499600-13503800	Enhancers	Fetal Brain Male	brain
27	chr18:13499600-13506000	Weak transcription	Primary B cells from cord blood	blood
28	chr18:13499600-13539200	Weak transcription	Gastric	stomach
29	chr18:13499800-13500400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr18:13499800-13500400	Enhancers	Brain Germinal Matrix	brain
31	chr18:13499800-13500400	Enhancers	Brain Hippocampus Middle	brain
32	chr18:13499800-13500400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr18:13499800-13500400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr18:13499800-13500400	Enhancers	Spleen	Spleen
35	chr18:13499800-13500800	Enhancers	HepG2	liver
36	chr18:13499800-13501000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr18:13499800-13501000	Enhancers	Fetal Brain Female	brain
38	chr18:13499800-13501400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr18:13499800-13501400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr18:13499800-13501600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr18:13499800-13501600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr18:13499800-13501600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr18:13499800-13501600	Enhancers	Right Atrium	heart
44	chr18:13499800-13503400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr18:13499800-13514200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr18:13499800-13531000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr18:13500000-13500400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr18:13500000-13500400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr18:13500000-13500400	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr18:13500000-13500600	Enhancers	Fetal Heart	heart

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