Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1023162	0.83[ASN][1000 genomes]
rs1023163	0.89[ASN][1000 genomes]
rs1093774	0.89[ASN][1000 genomes]
rs12428341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12428751	1.00[EUR][1000 genomes]
rs17073661	1.00[EUR][1000 genomes]
rs17073936	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2234417	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2669033	0.96[ASN][1000 genomes]
rs280920	0.89[ASN][1000 genomes]
rs280921	0.89[ASN][1000 genomes]
rs280948	0.86[ASN][1000 genomes]
rs280957	0.83[ASN][1000 genomes]
rs280958	0.83[ASN][1000 genomes]
rs280959	0.86[ASN][1000 genomes]
rs280960	0.83[ASN][1000 genomes]
rs542930	0.93[ASN][1000 genomes]
rs547522	0.96[ASN][1000 genomes]
rs563819	0.89[ASN][1000 genomes]
rs566688	0.86[ASN][1000 genomes]
rs819102	0.89[ASN][1000 genomes]
rs819104	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30233800-30249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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