Variant report

Variant	rs35824834
Chromosome Location	chr3:52966316-52966317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52946225..52948200-chr3:52964998..52966587,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17052421	1.00[AMR][1000 genomes]
rs2336156	1.00[AMR][1000 genomes]
rs56019028	0.88[AFR][1000 genomes]
rs57660543	1.00[AMR][1000 genomes]
rs6790872	1.00[AMR][1000 genomes]
rs73839529	1.00[AMR][1000 genomes]
rs73839534	1.00[AMR][1000 genomes]
rs73839720	1.00[AMR][1000 genomes]
rs73839725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv1818974	chr3:52966316-53096394	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52932000-52970000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:52932000-52978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:52932200-52966400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:52932200-52967800	Weak transcription	HSMM	muscle
5	chr3:52932200-52968600	Weak transcription	Osteobl	bone
6	chr3:52932200-52968800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:52932200-52968800	Weak transcription	Fetal Brain Male	brain
8	chr3:52932400-52968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:52932400-52968600	Weak transcription	NHDF-Ad	bronchial
10	chr3:52932400-52968800	Weak transcription	NHEK	skin
11	chr3:52935600-52968600	Strong transcription	Dnd41	blood
12	chr3:52941800-52980200	Weak transcription	Psoas Muscle	Psoas
13	chr3:52947400-52968000	Weak transcription	Fetal Lung	lung
14	chr3:52949000-52968800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:52950000-52966600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:52951200-52966400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:52952000-52968600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:52954000-53012200	Weak transcription	Esophagus	oesophagus
19	chr3:52954200-53012200	Weak transcription	Pancreas	Pancrea
20	chr3:52954400-52968600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:52954600-52967000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:52954800-52968400	Weak transcription	Brain Substantia Nigra	brain
23	chr3:52954800-52976800	Weak transcription	Brain Germinal Matrix	brain
24	chr3:52955200-52968600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:52955200-52968600	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:52955200-52986400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:52955800-52968800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:52956000-52968600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:52956000-52973800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:52956200-52968400	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:52956400-52967600	Weak transcription	Fetal Brain Female	brain
32	chr3:52956400-52986400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:52957000-52967600	Weak transcription	Aorta	Aorta
34	chr3:52957200-52966600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:52957200-52974800	Weak transcription	Primary T cells from cord blood	blood
36	chr3:52958200-52985800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:52960200-52979600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:52961200-52966400	Strong transcription	Placenta	Placenta
39	chr3:52961400-52968800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:52961600-52987000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr3:52962400-52967200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:52962400-52967400	Weak transcription	Right Ventricle	heart
43	chr3:52962400-52968400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr3:52962400-52968600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:52962400-52968600	Weak transcription	A549	lung
46	chr3:52962400-52969800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:52962400-52969800	Weak transcription	HMEC	breast
48	chr3:52962400-52970000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:52962400-52975800	Weak transcription	HepG2	liver
50	chr3:52962400-52986600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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