Variant report

Variant	rs73839529
Chromosome Location	chr3:52929741-52929742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17052421	1.00[AMR][1000 genomes]
rs2336156	1.00[AMR][1000 genomes]
rs35824834	1.00[AMR][1000 genomes]
rs57660543	1.00[AMR][1000 genomes]
rs6790872	1.00[AMR][1000 genomes]
rs73839534	1.00[AMR][1000 genomes]
rs73839720	1.00[AMR][1000 genomes]
rs73839725	1.00[AMR][1000 genomes]
rs9814714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52886600-52930200	Weak transcription	Colonic Mucosa	Colon
2	chr3:52908400-52930600	Weak transcription	A549	lung
3	chr3:52910000-52930200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:52910200-52929800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:52910200-52930000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:52910200-52930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:52910200-52930000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:52910400-52930200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:52916400-52930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:52919200-52930200	Weak transcription	Fetal Kidney	kidney
11	chr3:52920200-52929800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:52920400-52930600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:52920400-52930600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:52920400-52930600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:52921600-52930600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:52924000-52930000	Enhancers	Brain Substantia Nigra	brain
17	chr3:52924200-52930200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr3:52924600-52930200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr3:52925400-52929800	Enhancers	Brain Anterior Caudate	brain
20	chr3:52925400-52929800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr3:52925400-52929800	Weak transcription	NHEK	skin
22	chr3:52925600-52930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:52925600-52930600	Weak transcription	Esophagus	oesophagus
24	chr3:52926000-52929800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:52926000-52930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:52926200-52930400	Weak transcription	Placenta	Placenta
27	chr3:52926400-52930000	Weak transcription	Fetal Heart	heart
28	chr3:52926400-52930200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:52926400-52930200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:52926600-52929800	Enhancers	Brain Angular Gyrus	brain
31	chr3:52926600-52930200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:52926600-52930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:52926600-52930200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:52926800-52930200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:52927400-52930000	Enhancers	Liver	Liver
36	chr3:52927400-52930000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr3:52927400-52930200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr3:52927400-52930200	Weak transcription	K562	blood
39	chr3:52927400-52930600	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr3:52927600-52930200	Enhancers	Duodenum Mucosa	Duodenum
41	chr3:52927600-52930400	Enhancers	Primary T cells fromperipheralblood	blood
42	chr3:52927600-52930600	Enhancers	Gastric	stomach
43	chr3:52927600-52930600	Enhancers	Pancreas	Pancrea
44	chr3:52927800-52929800	Genic enhancers	Fetal Stomach	stomach
45	chr3:52927800-52930000	Weak transcription	Primary T cells from cord blood	blood
46	chr3:52927800-52930400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:52927800-52930600	Weak transcription	HSMMtube	muscle
48	chr3:52928000-52930200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:52928000-52930200	Weak transcription	Osteobl	bone
50	chr3:52928000-52930400	Enhancers	Primary T helper cells fromperipheralblood	blood

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