Variant report

Variant	rs73839534
Chromosome Location	chr3:52952004-52952005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52947000..52951038-chr3:52951338..52956335,5	K562	blood:
2	chr3:52947000..52950215-chr3:52950921..52954800,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17052421	1.00[AMR][1000 genomes]
rs2336156	1.00[AMR][1000 genomes]
rs35824834	1.00[AMR][1000 genomes]
rs57660543	1.00[AMR][1000 genomes]
rs6790872	1.00[AMR][1000 genomes]
rs73839529	1.00[AMR][1000 genomes]
rs73839720	1.00[AMR][1000 genomes]
rs73839725	1.00[AMR][1000 genomes]
rs9814714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52931800-52965400	Weak transcription	Spleen	Spleen
2	chr3:52932000-52953400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:52932000-52954000	Weak transcription	Small Intestine	intestine
4	chr3:52932000-52964000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:52932000-52970000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:52932000-52978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:52932200-52952800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:52932200-52953600	Weak transcription	Right Ventricle	heart
9	chr3:52932200-52953800	Weak transcription	Ovary	ovary
10	chr3:52932200-52961400	Weak transcription	HSMMtube	muscle
11	chr3:52932200-52961800	Weak transcription	A549	lung
12	chr3:52932200-52963000	Weak transcription	Stomach Mucosa	stomach
13	chr3:52932200-52966400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:52932200-52967800	Weak transcription	HSMM	muscle
15	chr3:52932200-52968600	Weak transcription	Osteobl	bone
16	chr3:52932200-52968800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:52932200-52968800	Weak transcription	Fetal Brain Male	brain
18	chr3:52932400-52953000	Weak transcription	Brain Angular Gyrus	brain
19	chr3:52932400-52953400	Weak transcription	Fetal Kidney	kidney
20	chr3:52932400-52968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:52932400-52968600	Weak transcription	NHDF-Ad	bronchial
22	chr3:52932400-52968800	Weak transcription	NHEK	skin
23	chr3:52935600-52968600	Strong transcription	Dnd41	blood
24	chr3:52937200-52959800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:52938000-52959000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr3:52939400-52953000	Weak transcription	Aorta	Aorta
27	chr3:52939600-52953400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:52939600-52961200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:52940200-52953400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:52941800-52961600	Weak transcription	Colonic Mucosa	Colon
31	chr3:52941800-52980200	Weak transcription	Psoas Muscle	Psoas
32	chr3:52943200-52958800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:52943200-52958800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:52943600-52957000	Strong transcription	Placenta	Placenta
35	chr3:52943600-52962400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:52943600-52964000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:52943800-52956200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:52943800-52957600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:52944400-52956400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:52945200-52960000	Weak transcription	Gastric	stomach
41	chr3:52946800-52952400	Strong transcription	Primary B cells from cord blood	blood
42	chr3:52947200-52952800	Weak transcription	Pancreas	Pancrea
43	chr3:52947200-52953000	Weak transcription	Lung	lung
44	chr3:52947200-52953600	Weak transcription	Esophagus	oesophagus
45	chr3:52947400-52953400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:52947400-52953600	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:52947400-52953600	Weak transcription	Thymus	Thymus
48	chr3:52947400-52968000	Weak transcription	Fetal Lung	lung
49	chr3:52947600-52953400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:52947600-52953400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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