Variant report

Variant	rs35842591
Chromosome Location	chr19:19707494-19707495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19705848..19708142-chr19:19747423..19748977,2	MCF-7	breast:
2	chr19:19701845..19703912-chr19:19706648..19708750,2	K562	blood:
3	chr19:19707413..19710256-chr19:19720024..19721956,2	K562	blood:
4	chr19:19705245..19708025-chr19:19737732..19740369,3	MCF-7	breast:
5	chr19:19699149..19708161-chr19:19735507..19742255,11	MCF-7	breast:
6	chr19:19661215..19662873-chr19:19705870..19708009,2	MCF-7	breast:
7	chr19:19707335..19710149-chr19:19710538..19713142,3	MCF-7	breast:
8	chr19:19700624..19702587-chr19:19705452..19707616,2	MCF-7	breast:
9	chr19:19706085..19710226-chr19:19714067..19716882,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000064547	Chromatin interaction
ENSG00000089639	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12611058	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12974028	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12977917	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12981270	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12982628	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12985142	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1476459	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33982830	0.94[EUR][1000 genomes]
rs34096655	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34316070	0.93[EUR][1000 genomes]
rs34316527	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34324119	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34424437	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35209041	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35437712	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35553578	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56083851	0.90[EUR][1000 genomes]
rs62134460	0.89[EUR][1000 genomes]
rs62137783	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62137816	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62137820	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62137822	0.91[EUR][1000 genomes]
rs7247165	0.95[EUR][1000 genomes]
rs73004920	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs750216	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv518076	chr19:19692579-19715794	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19698800-19708400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr19:19700600-19708600	Strong transcription	Thymus	Thymus
3	chr19:19702400-19713200	Weak transcription	Brain Anterior Caudate	brain
4	chr19:19702600-19708400	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr19:19702600-19708600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr19:19702600-19709000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr19:19702600-19712400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr19:19702600-19713200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr19:19702600-19713400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:19702600-19713400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr19:19702600-19713600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr19:19702600-19719400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:19702800-19712400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr19:19703000-19707800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr19:19703400-19707800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr19:19703400-19710200	Strong transcription	Fetal Stomach	stomach
17	chr19:19703400-19717000	Weak transcription	Fetal Muscle Leg	muscle
18	chr19:19703800-19708200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr19:19703800-19717000	Weak transcription	Spleen	Spleen
20	chr19:19704000-19708000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr19:19704400-19712200	Weak transcription	Brain Germinal Matrix	brain
22	chr19:19704600-19708000	Weak transcription	Primary T cells from cord blood	blood
23	chr19:19704600-19708200	Weak transcription	Dnd41	blood
24	chr19:19704800-19708000	Weak transcription	Fetal Thymus	thymus
25	chr19:19704800-19708200	Weak transcription	Ovary	ovary
26	chr19:19704800-19708600	Enhancers	GM12878-XiMat	blood
27	chr19:19705200-19707600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:19705200-19707600	Enhancers	HSMMtube	muscle
29	chr19:19705200-19707600	Enhancers	NHDF-Ad	bronchial
30	chr19:19705200-19707800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr19:19705200-19707800	Enhancers	Placenta	Placenta
32	chr19:19705400-19707600	Enhancers	NHLF	lung
33	chr19:19705400-19708400	Enhancers	Adipose Nuclei	Adipose
34	chr19:19705600-19708600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:19705800-19707600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr19:19706000-19707600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:19706200-19712400	Weak transcription	Gastric	stomach
38	chr19:19706200-19712800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr19:19706400-19707600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:19706400-19708200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr19:19706400-19708400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr19:19706400-19711800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr19:19706400-19712800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr19:19706400-19713000	Weak transcription	NHEK	skin
45	chr19:19706600-19708200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr19:19706600-19708200	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr19:19706600-19708200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr19:19706600-19708600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr19:19706600-19708600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr19:19706600-19712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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