Variant report

Variant	rs35852964
Chromosome Location	chr9:116119329-116119330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116118659..116121326-chr9:116124549..116126674,2	MCF-7	breast:
2	chr9:116116765..116119707-chr9:116134717..116136429,2	K562	blood:
3	chr9:116116941..116119780-chr9:116168101..116172088,3	MCF-7	breast:
4	chr9:116108733..116111186-chr9:116118329..116120582,2	MCF-7	breast:
5	chr9:116117613..116119725-chr9:116129685..116131579,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10817477	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10981734	0.89[AMR][1000 genomes]
rs10981736	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10981754	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12684385	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13289574	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16932730	0.89[AMR][1000 genomes]
rs16932806	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2296074	0.88[EUR][1000 genomes]
rs2296075	0.89[AMR][1000 genomes]
rs2296076	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28480972	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34289746	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34294772	0.89[AMR][1000 genomes]
rs34429100	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34749539	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35275471	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35772163	0.89[AMR][1000 genomes]
rs35860025	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35915957	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3810920	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61161242	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs818711	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv519849	chr9:116111407-116144973	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1036586	chr9:116118902-116136993	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116112800-116122800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116113000-116135600	Weak transcription	Colonic Mucosa	Colon
3	chr9:116113000-116138000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:116113400-116135200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:116113800-116122200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:116113800-116137800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:116114000-116127400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:116114200-116136400	Weak transcription	Primary B cells from cord blood	blood
9	chr9:116115000-116121600	Weak transcription	Gastric	stomach
10	chr9:116115200-116121000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:116115200-116121600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:116115400-116123400	Weak transcription	Stomach Mucosa	stomach
13	chr9:116115400-116135000	Weak transcription	Esophagus	oesophagus
14	chr9:116115600-116121600	Weak transcription	Pancreas	Pancrea
15	chr9:116115600-116132800	Weak transcription	Fetal Intestine Large	intestine
16	chr9:116115800-116125800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:116116200-116122600	Weak transcription	Brain Anterior Caudate	brain
18	chr9:116116400-116137000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:116116600-116126400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:116117800-116124000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:116118000-116122400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:116118200-116120200	Weak transcription	Fetal Intestine Small	intestine
23	chr9:116118800-116121800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr9:116119000-116120000	Enhancers	HepG2	liver

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