Variant report

Variant	rs35862989
Chromosome Location	chr12:41408740-41408741
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11179721	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11833511	0.93[ASN][1000 genomes]
rs12318791	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12321711	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12809592	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12811306	0.82[AMR][1000 genomes]
rs12812222	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12812376	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12813644	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12816087	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12821567	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12825145	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12825902	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12828389	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12829787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12833053	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34016577	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34128411	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34180877	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34269753	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34384075	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34482675	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34554849	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34601389	0.80[ASN][1000 genomes]
rs34622861	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34823642	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35068475	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35135815	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35143604	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35168538	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35243767	0.80[ASN][1000 genomes]
rs35328876	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35414877	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35450098	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35462205	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35617364	0.80[ASN][1000 genomes]
rs35636053	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35665037	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35716153	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35742712	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55639255	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71449788	0.80[ASN][1000 genomes]
rs71449790	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71449791	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71449793	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71449794	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71449796	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71449797	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71449802	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71451503	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71451512	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832382	chr12:41359550-41489681	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41405200-41429800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:41405400-41417600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:41405600-41423000	Weak transcription	Ovary	ovary
4	chr12:41406800-41409000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:41407000-41425200	Weak transcription	Brain Angular Gyrus	brain
6	chr12:41407400-41408800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:41407400-41408800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:41407400-41409000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:41407400-41409000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:41407400-41409000	Enhancers	NHEK	skin
11	chr12:41407400-41409200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr12:41407400-41409200	Enhancers	NH-A	brain
13	chr12:41408000-41413000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:41408200-41409400	Enhancers	HUVEC	blood vessel
15	chr12:41408200-41426400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:41408200-41449800	Weak transcription	Brain Anterior Caudate	brain
17	chr12:41408400-41409000	Enhancers	A549	lung
18	chr12:41408400-41421400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:41408600-41409000	Enhancers	Colon Smooth Muscle	Colon

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