Variant report

Variant	rs11833511
Chromosome Location	chr12:41501413-41501414
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11179721	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12318791	0.87[ASN][1000 genomes]
rs12321711	0.87[ASN][1000 genomes]
rs12809592	0.91[AMR][1000 genomes]
rs12811306	0.86[AMR][1000 genomes]
rs12812222	0.86[AMR][1000 genomes]
rs12812376	0.86[AMR][1000 genomes]
rs12813013	0.82[AMR][1000 genomes]
rs12813644	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815418	0.82[AMR][1000 genomes]
rs12816087	0.86[AMR][1000 genomes]
rs12821567	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12825145	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12825902	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12828342	0.82[AMR][1000 genomes]
rs12828389	0.91[AMR][1000 genomes]
rs12828796	0.82[AMR][1000 genomes]
rs12829787	0.82[AMR][1000 genomes]
rs12833053	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34016577	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34128411	0.91[AMR][1000 genomes]
rs34180877	0.82[AMR][1000 genomes]
rs34269753	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34384075	0.87[ASN][1000 genomes]
rs34482675	0.91[AMR][1000 genomes]
rs34554849	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34601389	0.82[AMR][1000 genomes]
rs34622861	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34739748	0.82[AMR][1000 genomes]
rs34823642	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35068475	0.86[AMR][1000 genomes]
rs35135815	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35143604	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35168538	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35188176	0.82[AMR][1000 genomes]
rs35243767	0.82[AMR][1000 genomes]
rs35328876	0.86[AMR][1000 genomes]
rs35414877	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35450098	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35462205	0.86[AMR][1000 genomes]
rs35617364	0.82[AMR][1000 genomes]
rs35636053	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35665037	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35716153	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35742712	0.91[AMR][1000 genomes]
rs35862989	0.93[ASN][1000 genomes]
rs35958887	0.82[AMR][1000 genomes]
rs55639255	0.91[AMR][1000 genomes]
rs71449788	0.82[AMR][1000 genomes]
rs71449789	0.82[AMR][1000 genomes]
rs71449790	0.86[AMR][1000 genomes]
rs71449791	0.86[AMR][1000 genomes]
rs71449793	0.86[AMR][1000 genomes]
rs71449794	0.86[AMR][1000 genomes]
rs71449796	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs71449797	0.91[AMR][1000 genomes]
rs71449802	0.91[AMR][1000 genomes]
rs71451503	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71451512	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3486219	chr12:41494541-41517945	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3486208	chr12:41494583-41517897	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3486230	chr12:41494583-41517897	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv14849	chr12:41494646-41517821	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1048124	chr12:41499221-41585315	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
10	nsv684	chr12:41499912-41545039	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41498000-41502000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:41498400-41502200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:41501400-41502400	Enhancers	Fetal Stomach	stomach
4	chr12:41501400-41503400	Enhancers	Fetal Brain Male	brain
5	chr12:41501400-41503400	Enhancers	Rectal Smooth Muscle	rectum
6	chr12:41501400-41503600	Enhancers	Colon Smooth Muscle	Colon

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