Variant report

Variant	rs35863758
Chromosome Location	chr11:85913726-85913727
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85911743..85914059-chr11:85915051..85916646,2	MCF-7	breast:
2	chr11:85903738..85905603-chr11:85911140..85914043,2	K562	blood:
3	chr11:85904057..85906241-chr11:85912023..85914262,2	K562	blood:
4	chr11:85908463..85910477-chr11:85912676..85914784,2	K562	blood:
5	chr11:85844122..85845739-chr11:85912791..85915095,2	K562	blood:
6	chr11:85912105..85914194-chr11:85954802..85957064,2	K562	blood:
7	chr11:85768233..85770657-chr11:85911985..85913899,2	K562	blood:
8	chr11:85913237..85915607-chr11:85952212..85954653,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254502	Chromatin interaction
ENSG00000254699	Chromatin interaction
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10898446	0.85[EUR][1000 genomes]
rs11608125	0.85[EUR][1000 genomes]
rs12786748	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85908600-85920000	Weak transcription	Small Intestine	intestine
2	chr11:85911200-85916400	Weak transcription	Hela-S3	cervix
3	chr11:85912400-85914400	Enhancers	Fetal Kidney	kidney
4	chr11:85913000-85914400	Flanking Active TSS	Dnd41	blood
5	chr11:85913200-85913800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:85913200-85913800	Active TSS	Primary T cells fromperipheralblood	blood
7	chr11:85913200-85913800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:85913200-85913800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr11:85913200-85913800	Flanking Active TSS	Fetal Intestine Small	intestine
10	chr11:85913200-85913800	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr11:85913200-85914000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
12	chr11:85913200-85914000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr11:85913200-85914000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr11:85913200-85914000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr11:85913200-85914000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:85913200-85914000	Active TSS	Colonic Mucosa	Colon
17	chr11:85913200-85914000	Active TSS	Duodenum Mucosa	Duodenum
18	chr11:85913200-85914000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr11:85913200-85914000	Active TSS	Fetal Thymus	thymus
20	chr11:85913200-85914000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr11:85913200-85914000	Active TSS	Right Atrium	heart
22	chr11:85913200-85914000	Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr11:85913200-85914000	Active TSS	Thymus	Thymus
24	chr11:85913200-85914200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr11:85913200-85914200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr11:85913200-85914200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr11:85913200-85914200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:85913200-85914200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:85913200-85914200	Active TSS	Fetal Brain Female	brain
30	chr11:85913200-85914200	Enhancers	Fetal Heart	heart
31	chr11:85913400-85913800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:85913400-85913800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:85913400-85913800	Active TSS	Colon Smooth Muscle	Colon
34	chr11:85913400-85913800	Active TSS	Fetal Muscle Trunk	muscle
35	chr11:85913400-85913800	Active TSS	Placenta	Placenta
36	chr11:85913400-85913800	Weak transcription	Stomach Mucosa	stomach
37	chr11:85913400-85914000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr11:85913400-85914000	Active TSS	H9 Cell Line	embryonic stem cell
39	chr11:85913400-85914000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:85913400-85914000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr11:85913400-85914000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:85913400-85914000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:85913400-85914000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:85913400-85914000	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr11:85913400-85914000	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr11:85913400-85914000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:85913400-85914000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:85913400-85914000	Active TSS	Adipose Nuclei	Adipose
49	chr11:85913400-85914000	Active TSS	Aorta	Aorta
50	chr11:85913400-85914000	Active TSS	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links