Variant report

Variant	rs10898446
Chromosome Location	chr11:85914352-85914353
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85781558..85783206-chr11:85914108..85916095,2	K562	blood:
2	chr11:85834416..85836001-chr11:85913834..85915379,2	K562	blood:
3	chr11:85914261..85916846-chr11:85923142..85927107,3	K562	blood:
4	chr11:85908463..85910477-chr11:85912676..85914784,2	K562	blood:
5	chr11:85844122..85845739-chr11:85912791..85915095,2	K562	blood:
6	chr11:85914104..85917156-chr11:85928953..85931838,4	K562	blood:
7	chr11:85913237..85915607-chr11:85952212..85954653,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10751137	0.82[YRI][hapmap]
rs10792842	0.82[YRI][hapmap]
rs10792843	0.80[YRI][hapmap]
rs10792844	0.91[CEU][hapmap];0.80[CHB][hapmap]
rs10898453	0.82[ASN][1000 genomes]
rs11608125	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223670	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12786748	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34471798	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35863758	0.85[EUR][1000 genomes]
rs7120222	0.82[YRI][hapmap]
rs7122629	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7924472	0.80[YRI][hapmap]
rs974144	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85908600-85920000	Weak transcription	Small Intestine	intestine
2	chr11:85911200-85916400	Weak transcription	Hela-S3	cervix
3	chr11:85912400-85914400	Enhancers	Fetal Kidney	kidney
4	chr11:85913000-85914400	Flanking Active TSS	Dnd41	blood
5	chr11:85914000-85914400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr11:85914000-85914400	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr11:85914000-85914400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:85914000-85914400	Enhancers	Brain Substantia Nigra	brain
9	chr11:85914000-85914400	Flanking Active TSS	GM12878-XiMat	blood
10	chr11:85914000-85914400	Flanking Active TSS	K562	blood
11	chr11:85914000-85916800	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:85914000-85918200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:85914000-85918600	Enhancers	Placenta	Placenta
14	chr11:85914000-85920800	Weak transcription	Ovary	ovary
15	chr11:85914000-85926200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:85914200-85914400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:85914200-85914400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:85914200-85914400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr11:85914200-85914400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:85914200-85914400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr11:85914200-85914400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr11:85914200-85914400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr11:85914200-85914400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr11:85914200-85914400	Enhancers	Brain Anterior Caudate	brain
25	chr11:85914200-85914400	Enhancers	Fetal Lung	lung
26	chr11:85914200-85914600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:85914200-85914800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:85914200-85914800	Enhancers	Primary hematopoietic stem cells	blood
29	chr11:85914200-85915000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:85914200-85915000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:85914200-85915000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:85914200-85915200	Weak transcription	Right Atrium	heart
33	chr11:85914200-85915600	Enhancers	Adipose Nuclei	Adipose
34	chr11:85914200-85915800	Enhancers	Primary B cells from peripheral blood	blood
35	chr11:85914200-85917400	Weak transcription	Fetal Heart	heart
36	chr11:85914200-85917600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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