Variant report

Variant	rs34471798
Chromosome Location	chr11:85925884-85925885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85872034..85874888-chr11:85925507..85928430,2	K562	blood:
2	chr11:85914261..85916846-chr11:85923142..85927107,3	K562	blood:
3	chr11:85566308..85568768-chr11:85924310..85926131,2	MCF-7	breast:
4	chr11:85925600..85928219-chr11:85928375..85931276,2	K562	blood:
5	chr11:85750217..85751892-chr11:85925009..85927244,2	MCF-7	breast:
6	chr11:85779435..85782056-chr11:85924949..85926560,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction
ENSG00000150676	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10898446	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898453	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11608125	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12786748	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7122629	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85914000-85926200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:85917200-85928800	Weak transcription	Hela-S3	cervix
3	chr11:85919600-85929200	Weak transcription	Right Atrium	heart
4	chr11:85921000-85929000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:85921600-85929800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:85921800-85929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:85923600-85929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:85923600-85929800	Weak transcription	NHEK	skin
9	chr11:85924200-85929200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:85924400-85929000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:85925200-85929200	Weak transcription	Spleen	Spleen
12	chr11:85925600-85926000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:85925600-85926200	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:85925600-85926400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:85925600-85926400	Enhancers	Placenta	Placenta
16	chr11:85925600-85926400	Enhancers	K562	blood
17	chr11:85925600-85926400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr11:85925800-85926000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:85925800-85926200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr11:85925800-85926200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:85925800-85926200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:85925800-85926200	Flanking Active TSS	GM12878-XiMat	blood
23	chr11:85925800-85926400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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