Variant report

Variant	rs10898453
Chromosome Location	chr11:85959043-85959044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85957358..85959718-chr11:85962458..85964568,2	K562	blood:
2	chr11:85957956..85960491-chr11:85965054..85967049,2	K562	blood:
3	chr11:85951079..85952582-chr11:85956879..85959583,2	K562	blood:
4	chr11:85958310..85960739-chr11:85984735..85987503,2	MCF-7	breast:
5	chr11:85374101..85375834-chr11:85958556..85961533,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10792844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898446	0.82[ASN][1000 genomes]
rs11608125	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12223670	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12786748	0.82[ASN][1000 genomes]
rs34471798	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7122629	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957000-85963800	Weak transcription	Spleen	Spleen
2	chr11:85957200-85959200	Weak transcription	Gastric	stomach
3	chr11:85957200-85959800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:85957200-85959800	Weak transcription	Pancreas	Pancrea
5	chr11:85957200-85963800	Weak transcription	Lung	lung
6	chr11:85957200-85972400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:85957200-85972400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:85957200-85972400	Weak transcription	Esophagus	oesophagus
9	chr11:85957200-85995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:85957400-85959200	Enhancers	Brain Angular Gyrus	brain
11	chr11:85957400-85959600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr11:85957400-85959600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:85957400-85959800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:85957400-85960000	Enhancers	Small Intestine	intestine
15	chr11:85957400-85961400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:85957400-85961600	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:85957400-85962400	Weak transcription	Placenta	Placenta
18	chr11:85957400-85967600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:85957400-85985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
21	chr11:85957600-85959200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:85957600-85959400	Enhancers	Fetal Heart	heart
23	chr11:85957600-85959400	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:85957600-85959600	Enhancers	Liver	Liver
25	chr11:85957600-85961200	Enhancers	Primary T cells from cord blood	blood
26	chr11:85957600-85961600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:85957800-85959200	Enhancers	Colon Smooth Muscle	Colon
28	chr11:85957800-85959200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:85957800-85959200	Enhancers	Fetal Lung	lung
30	chr11:85957800-85959200	Enhancers	HUVEC	blood vessel
31	chr11:85957800-85959400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:85957800-85959600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:85957800-85959800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:85957800-85959800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:85957800-85960000	Enhancers	Adipose Nuclei	Adipose
36	chr11:85957800-85960200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:85957800-85960600	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:85957800-85960800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:85957800-85961600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr11:85957800-85962000	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr11:85957800-85962600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr11:85957800-85962800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:85957800-85967800	Weak transcription	Thymus	Thymus
44	chr11:85957800-85968000	Weak transcription	HSMMtube	muscle
45	chr11:85957800-85968600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:85957800-85968600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:85957800-85997200	Weak transcription	Colonic Mucosa	Colon
48	chr11:85957800-85999800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:85958000-85959200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:85958000-85959200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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