Variant report

Variant	rs11608125
Chromosome Location	chr11:85920981-85920982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10751137	0.90[YRI][hapmap]
rs10792842	0.90[YRI][hapmap]
rs10792843	0.86[ASW][hapmap];0.90[YRI][hapmap]
rs10792844	1.00[ASW][hapmap];0.91[CEU][hapmap];0.80[CHB][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs10898446	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898453	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10898457	0.86[ASW][hapmap];0.82[YRI][hapmap]
rs11234610	0.86[ASW][hapmap];0.82[YRI][hapmap]
rs11601568	0.89[YRI][hapmap]
rs12223670	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12786748	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34471798	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35863758	0.85[EUR][1000 genomes]
rs7120222	0.90[YRI][hapmap]
rs7122629	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7924472	0.86[ASW][hapmap];0.90[YRI][hapmap]
rs974144	0.86[ASW][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11608125	RAB38	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85914000-85926200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:85917200-85928800	Weak transcription	Hela-S3	cervix
3	chr11:85919200-85921000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:85919200-85925600	Weak transcription	Placenta	Placenta
5	chr11:85919400-85921000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:85919600-85923800	Enhancers	HepG2	liver
7	chr11:85919600-85929200	Weak transcription	Right Atrium	heart
8	chr11:85920000-85925600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:85920400-85925800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:85920800-85921600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:85920800-85923600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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