Variant report

Variant	rs11601568
Chromosome Location	chr11:86049537-86049538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1026243	0.89[YRI][hapmap]
rs10792844	0.84[CEU][hapmap];0.89[YRI][hapmap]
rs10792848	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792850	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792851	0.90[ASN][1000 genomes]
rs10898465	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10898469	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11234607	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234610	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234613	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11234622	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11603237	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11824436	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11826971	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223670	0.84[CEU][hapmap];0.89[YRI][hapmap]
rs12224439	0.94[EUR][1000 genomes]
rs12224449	0.85[AMR][1000 genomes]
rs12224453	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34675041	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592284	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6592285	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7106664	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7122629	0.84[CEU][hapmap];0.88[YRI][hapmap]
rs71465631	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
4	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
5	chr11:86014600-86049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
7	chr11:86014800-86058600	Weak transcription	NHLF	lung
8	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:86015200-86051400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
12	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
13	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:86024200-86052200	Weak transcription	Colonic Mucosa	Colon
15	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
16	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
17	chr11:86025200-86057800	Weak transcription	HepG2	liver
18	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:86029600-86050800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:86032600-86057600	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:86033600-86057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:86035600-86058800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:86038000-86059800	Weak transcription	NH-A	brain
26	chr11:86038600-86050800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
28	chr11:86042000-86057600	Weak transcription	NHDF-Ad	bronchial
29	chr11:86042200-86052800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:86043800-86049800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:86043800-86050800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:86044400-86050000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:86045000-86049800	Strong transcription	HSMM	muscle
34	chr11:86045200-86050600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:86045200-86050600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:86045600-86049600	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr11:86045600-86049800	Strong transcription	Fetal Intestine Large	intestine
38	chr11:86045600-86050400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:86045600-86050600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:86045600-86051200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:86045600-86051200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:86045800-86049600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:86045800-86049800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:86045800-86050000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:86045800-86050400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:86045800-86050400	Strong transcription	Fetal Muscle Leg	muscle
47	chr11:86045800-86050600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:86045800-86050600	Strong transcription	Adipose Nuclei	Adipose
49	chr11:86045800-86050800	Strong transcription	Primary B cells from cord blood	blood
50	chr11:86046000-86049600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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