Variant report

Variant	rs11824436
Chromosome Location	chr11:86064142-86064143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86063853..86065709-chr11:86072094..86073690,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1026243	0.80[YRI][hapmap]
rs10792843	0.81[YRI][hapmap]
rs10792844	0.90[YRI][hapmap]
rs10792848	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792850	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792851	0.96[ASN][1000 genomes]
rs10898465	0.91[CEU][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10898469	0.93[EUR][1000 genomes]
rs11234607	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234610	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234613	0.83[EUR][1000 genomes]
rs11234622	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601568	0.92[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11603237	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11826971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221741	0.81[AFR][1000 genomes]
rs12223670	0.90[YRI][hapmap]
rs12224439	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12224449	0.92[AMR][1000 genomes]
rs12224453	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1584722	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34675041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592284	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6592285	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106664	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7122629	0.89[YRI][hapmap]
rs71465631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924472	0.81[YRI][hapmap]
rs974144	0.81[YRI][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
2	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
3	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
9	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
11	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:86049800-86068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:86050600-86068200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:86058000-86067600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:86058200-86071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:86058400-86067600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:86058600-86069800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:86058600-86070000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:86059800-86066400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:86061000-86066800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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