Variant report

Variant	rs6592285
Chromosome Location	chr11:86059481-86059482
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86053161..86055810-chr11:86057813..86060670,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149196	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10792848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792850	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10792851	0.95[ASN][1000 genomes]
rs10898465	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10898469	0.93[EUR][1000 genomes]
rs11234607	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234613	0.83[EUR][1000 genomes]
rs11234622	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11601568	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11603237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11824436	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11826971	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12224439	0.94[EUR][1000 genomes]
rs12224453	0.96[EUR][1000 genomes]
rs34675041	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7106664	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465631	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
2	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
3	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
6	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
8	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:86038000-86059800	Weak transcription	NH-A	brain
11	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:86049600-86060800	Weak transcription	A549	lung
16	chr11:86049600-86062600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
18	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
20	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:86049800-86059600	Weak transcription	Brain Substantia Nigra	brain
22	chr11:86049800-86060800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:86049800-86060800	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:86049800-86061800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:86049800-86062600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:86049800-86068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:86050000-86060000	Weak transcription	HMEC	breast
28	chr11:86050000-86060600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:86050000-86060800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:86050000-86061000	Weak transcription	GM12878-XiMat	blood
31	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:86050400-86059600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:86050400-86061400	Weak transcription	Fetal Intestine Small	intestine
34	chr11:86050600-86061000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:86050600-86063200	Weak transcription	Brain Germinal Matrix	brain
36	chr11:86050600-86068200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:86051400-86060800	Weak transcription	Fetal Lung	lung
38	chr11:86055400-86059600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:86055800-86059600	Strong transcription	Adipose Nuclei	Adipose
40	chr11:86056000-86059800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:86056400-86060400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:86057400-86059600	Strong transcription	Fetal Intestine Large	intestine
43	chr11:86057600-86059600	Strong transcription	Ovary	ovary
44	chr11:86058000-86059600	Weak transcription	Primary B cells from cord blood	blood
45	chr11:86058000-86059600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr11:86058000-86059600	Weak transcription	Gastric	stomach
47	chr11:86058000-86059600	Weak transcription	Lung	lung
48	chr11:86058000-86059600	Weak transcription	Pancreas	Pancrea
49	chr11:86058000-86059600	Weak transcription	Spleen	Spleen
50	chr11:86058000-86059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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