Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10953942	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953945	0.96[ASN][1000 genomes]
rs1117623	0.96[ASN][1000 genomes]
rs1117624	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11762069	0.96[ASN][1000 genomes]
rs12534341	0.98[ASN][1000 genomes]
rs12536194	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706370	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706375	0.96[ASN][1000 genomes]
rs17438501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2041650	0.84[ASN][1000 genomes]
rs2192295	0.98[ASN][1000 genomes]
rs2215792	0.96[ASN][1000 genomes]
rs34065436	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34346815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56153345	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62475691	0.81[AFR][1000 genomes]
rs6945198	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9640802	0.96[ASN][1000 genomes]
rs9640803	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121380000-121390800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121381200-121386200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121381400-121386400	Enhancers	HMEC	breast
4	chr7:121382400-121385200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:121383800-121386400	Enhancers	NHEK	skin
6	chr7:121384200-121386200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:121384200-121386600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:121384400-121385600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:121384800-121385800	Enhancers	Stomach Mucosa	stomach

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