Variant report

Variant	rs6945198
Chromosome Location	chr7:121378496-121378497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10953942	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1117624	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12534341	0.81[ASN][1000 genomes]
rs12536194	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12706370	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12706373	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12706374	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17438501	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2041650	0.95[ASN][1000 genomes]
rs2192295	0.81[ASN][1000 genomes]
rs2215792	0.82[ASN][1000 genomes]
rs34065436	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34346815	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35881110	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56153345	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121376600-121381400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:121377000-121381200	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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