Variant report

Variant	rs35907640
Chromosome Location	chr8:61311164-61311165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61309519..61311341-chr8:61311784..61313597,2	MCF-7	breast:
2	chr8:61192430..61196351-chr8:61307974..61311506,6	K562	blood:

Variant related genes	Relation type
ENSG00000178538	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10088058	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10101758	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10107773	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108568	0.93[ASN][1000 genomes]
rs10111967	0.85[ASN][1000 genomes]
rs13254748	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13271668	0.89[ASN][1000 genomes]
rs13272533	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13278073	0.85[ASN][1000 genomes]
rs13438846	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1893278	0.81[EUR][1000 genomes]
rs2068589	0.85[ASN][1000 genomes]
rs28484871	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28576477	0.89[ASN][1000 genomes]
rs28897378	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3886101	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56073139	0.89[ASN][1000 genomes]
rs62510180	0.89[ASN][1000 genomes]
rs6471876	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994818	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7002036	0.89[ASN][1000 genomes]
rs7820186	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1022752	chr8:61095248-61322302	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3371465	chr8:61115030-61356658	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv831334	chr8:61148796-61330190	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61309000-61311800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:61309000-61315200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:61309000-61330000	Weak transcription	Right Atrium	heart
4	chr8:61309200-61315000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:61309600-61315400	Weak transcription	Brain Anterior Caudate	brain
6	chr8:61310000-61314400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:61310000-61315200	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:61310000-61315400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:61310000-61315400	Weak transcription	Brain Inferior Temporal Lobe	brain

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