Variant report

Variant	rs10088058
Chromosome Location	chr8:61357569-61357570
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61357506..61359309-chr8:61366924..61369174,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10101758	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107773	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10108568	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10111967	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13254748	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13271668	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13272533	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277273	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13278073	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13438846	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16926232	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1893278	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1941464	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2068589	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28484871	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28576477	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28897378	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35907640	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3886101	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56073139	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs623910	0.88[EUR][1000 genomes]
rs62510180	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs646871	0.86[EUR][1000 genomes]
rs6471876	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6994818	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7002036	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7002467	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7820186	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7821955	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7841536	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61357200-61357600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr8:61357400-61357600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle

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