Variant report

Variant	rs7821955
Chromosome Location	chr8:61379800-61379801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10088058	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10101758	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10108568	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10111967	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13254748	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13271668	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13272533	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13277273	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278073	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13438846	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16926232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893278	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1941464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068589	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28576477	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28897378	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3886101	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56073139	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs623910	0.81[EUR][1000 genomes]
rs62510180	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs646871	0.82[ASN][1000 genomes]
rs6994818	0.84[EUR][1000 genomes]
rs7002036	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002467	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7841536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61369600-61379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:61370600-61379800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:61374600-61380000	Weak transcription	Aorta	Aorta
4	chr8:61376600-61383400	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:61376800-61382400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:61377200-61381800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:61377400-61381600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:61378400-61383000	Weak transcription	Adipose Nuclei	Adipose
9	chr8:61379400-61381000	Enhancers	HMEC	breast
10	chr8:61379600-61380400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:61379600-61380600	Enhancers	NHEK	skin
12	chr8:61379800-61380400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:61379800-61380400	Enhancers	A549	lung
14	chr8:61379800-61380600	Enhancers	K562	blood
15	chr8:61379800-61381800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links