Variant report

Variant	rs28897378
Chromosome Location	chr8:61361768-61361769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10088058	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101758	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107773	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10108568	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10111967	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13254748	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13271668	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13272533	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277273	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13278073	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13438846	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16926232	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1893278	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1941464	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2068589	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28484871	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28576477	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35907640	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3886101	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56073139	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs623910	0.88[EUR][1000 genomes]
rs62510180	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs646871	0.86[EUR][1000 genomes]
rs6471876	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6994818	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7002036	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7002467	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7820186	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7821955	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7841536	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61361200-61361800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:61361400-61361800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:61361600-61367000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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