Variant report

Variant	rs35909867
Chromosome Location	chr7:99348088-99348089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12333983	0.86[ASN][1000 genomes]
rs12536946	0.87[ASN][1000 genomes]
rs17161880	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005548	1.00[EUR][1000 genomes]
rs2404955	0.86[ASN][1000 genomes]
rs28878860	0.80[ASN][1000 genomes]
rs34880695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35974388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984428	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735451	0.86[ASN][1000 genomes]
rs3991809	0.86[ASN][1000 genomes]
rs4646462	1.00[EUR][1000 genomes]
rs58986456	0.80[ASN][1000 genomes]
rs59172435	1.00[EUR][1000 genomes]
rs59836234	0.86[ASN][1000 genomes]
rs60153739	0.87[ASN][1000 genomes]
rs60298785	1.00[EUR][1000 genomes]
rs61593387	1.00[EUR][1000 genomes]
rs6945984	0.87[ASN][1000 genomes]
rs6955424	0.82[ASN][1000 genomes]
rs72494456	1.00[EUR][1000 genomes]
rs72494458	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs939955	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv981555	chr7:99346675-99355848	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99311800-99349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:99339200-99352200	Weak transcription	Left Ventricle	heart
3	chr7:99345800-99348200	Weak transcription	HepG2	liver
4	chr7:99346200-99350200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:99346400-99350400	Enhancers	HMEC	breast
6	chr7:99346600-99350200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:99346600-99350200	Enhancers	NHEK	skin
8	chr7:99346600-99350400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:99346800-99350000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:99347400-99348600	Enhancers	Esophagus	oesophagus
11	chr7:99347600-99348200	Weak transcription	Aorta	Aorta
12	chr7:99347800-99349000	Enhancers	Hela-S3	cervix
13	chr7:99347800-99350400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:99348000-99348200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:99348000-99348600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:99348000-99348600	Enhancers	Pancreas	Pancrea
17	chr7:99348000-99348600	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:99348000-99348600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:99348000-99349000	Enhancers	A549	lung
20	chr7:99348000-99350800	Enhancers	Fetal Intestine Small	intestine
21	chr7:99348000-99351000	Enhancers	Fetal Intestine Large	intestine
22	chr7:99348000-99351000	Enhancers	Stomach Mucosa	stomach

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