Variant report

Variant	rs3735451
Chromosome Location	chr7:99355975-99355976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99355786..99358236-chr7:99360607..99362683,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10211	0.95[CHB][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap]
rs10242455	0.90[CHB][hapmap]
rs10282706	0.85[CHB][hapmap]
rs12333983	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360	0.95[CHB][hapmap]
rs12536946	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1357319	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[MEX][hapmap]
rs1419745	0.81[CHB][hapmap]
rs15524	0.90[CHB][hapmap]
rs17161774	0.81[CHB][hapmap]
rs17161783	0.81[CHB][hapmap]
rs17161880	0.86[ASN][1000 genomes]
rs1859690	0.90[CHB][hapmap]
rs1879859	0.95[CHB][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap]
rs2037498	0.95[CHB][hapmap];0.89[MEX][hapmap]
rs2037499	0.95[CHB][hapmap]
rs2222411	0.95[CHB][hapmap];0.89[MEX][hapmap]
rs2257401	0.95[CHB][hapmap]
rs2404770	0.95[CHB][hapmap]
rs2404955	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687075	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[MEX][hapmap]
rs2687076	0.95[CHB][hapmap];0.89[MEX][hapmap]
rs2687079	0.95[CHB][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap]
rs2687081	0.84[CHB][hapmap];0.89[GIH][hapmap]
rs2687086	0.95[CHB][hapmap]
rs2687087	0.95[CHB][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap]
rs2687133	0.95[CHB][hapmap]
rs2687134	0.95[CHB][hapmap];0.89[MEX][hapmap]
rs2687135	0.84[AMR][1000 genomes]
rs2687136	0.95[CHB][hapmap];0.89[MEX][hapmap]
rs2687139	0.95[CHB][hapmap]
rs2687140	0.88[CHB][hapmap]
rs2687142	0.95[CHB][hapmap];0.89[MEX][hapmap]
rs2687144	0.95[CHB][hapmap]
rs2687145	0.95[CHB][hapmap];0.89[MEX][hapmap]
rs2740561	0.95[CHB][hapmap]
rs2740565	0.95[CHB][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap]
rs28878860	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34880695	0.86[ASN][1000 genomes]
rs35909867	0.86[ASN][1000 genomes]
rs35974388	0.86[ASN][1000 genomes]
rs35984428	0.86[ASN][1000 genomes]
rs3735453	0.90[CHB][hapmap]
rs3991809	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646446	0.86[CHB][hapmap]
rs4646447	0.81[CHB][hapmap]
rs4646449	0.81[CHB][hapmap]
rs4646450	0.85[CHB][hapmap]
rs4646453	0.81[CHB][hapmap]
rs4646456	0.81[CHB][hapmap]
rs4646457	0.90[CHB][hapmap]
rs4646458	0.81[CHB][hapmap]
rs58986456	0.89[ASN][1000 genomes]
rs59836234	1.00[ASN][1000 genomes]
rs60153739	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6465750	0.90[CHB][hapmap]
rs6945984	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6955424	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72494458	0.85[ASN][1000 genomes]
rs776741	0.86[CHB][hapmap]
rs776746	0.90[CHB][hapmap]
rs7808022	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv482109	chr7:99354604-99381808	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv3478312	chr7:99355781-99356675	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3478313	chr7:99355938-99356600	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3735451	RELN	cis	parietal	SCAN
rs3735451	C7orf52	cis	cerebellum	SCAN
rs3735451	ZNF394	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99350800-99357600	Weak transcription	Fetal Intestine Small	intestine
2	chr7:99350800-99359800	Weak transcription	Fetal Lung	lung
3	chr7:99350800-99369800	Weak transcription	Pancreas	Pancrea
4	chr7:99351000-99364000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:99355400-99365800	Strong transcription	Liver	Liver

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