Variant report

Variant	rs2404955
Chromosome Location	chr7:99353279-99353280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99348892..99351554-chr7:99353145..99355344,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10211	1.00[CHB][hapmap]
rs10242455	0.94[CHB][hapmap]
rs10282706	0.88[CHB][hapmap]
rs12333983	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360	0.94[CHB][hapmap]
rs12536946	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1357319	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1419745	0.89[CHB][hapmap]
rs15524	0.94[CHB][hapmap]
rs17161774	0.83[CHB][hapmap]
rs17161780	0.82[CHB][hapmap]
rs17161783	0.89[CHB][hapmap]
rs17161880	0.86[ASN][1000 genomes]
rs1859690	0.94[CHB][hapmap]
rs1879859	1.00[CHB][hapmap]
rs2037498	1.00[CHB][hapmap]
rs2037499	0.94[CHB][hapmap]
rs2222411	1.00[CHB][hapmap]
rs2257401	0.94[CHB][hapmap]
rs2404770	0.94[CHB][hapmap]
rs2687075	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2687076	1.00[CHB][hapmap]
rs2687079	1.00[CHB][hapmap]
rs2687081	0.88[CHB][hapmap]
rs2687086	0.94[CHB][hapmap]
rs2687087	1.00[CHB][hapmap]
rs2687133	0.94[CHB][hapmap]
rs2687134	1.00[CHB][hapmap]
rs2687135	0.80[AMR][1000 genomes]
rs2687136	1.00[CHB][hapmap]
rs2687139	0.94[CHB][hapmap]
rs2687140	0.85[CHB][hapmap]
rs2687142	1.00[CHB][hapmap]
rs2687144	0.94[CHB][hapmap]
rs2687145	1.00[CHB][hapmap]
rs2740561	0.94[CHB][hapmap]
rs2740565	1.00[CHB][hapmap]
rs28878860	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34880695	0.86[ASN][1000 genomes]
rs35909867	0.86[ASN][1000 genomes]
rs35974388	0.86[ASN][1000 genomes]
rs35984428	0.86[ASN][1000 genomes]
rs3735451	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735453	0.94[CHB][hapmap]
rs3991809	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646446	0.94[CHB][hapmap]
rs4646447	0.89[CHB][hapmap]
rs4646449	0.89[CHB][hapmap]
rs4646450	0.88[CHB][hapmap]
rs4646453	0.89[CHB][hapmap]
rs4646456	0.89[CHB][hapmap]
rs4646457	0.94[CHB][hapmap]
rs4646458	0.89[CHB][hapmap]
rs58986456	0.89[ASN][1000 genomes]
rs59836234	1.00[ASN][1000 genomes]
rs60153739	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6465750	0.89[CHB][hapmap]
rs6945984	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6955424	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72494458	0.85[ASN][1000 genomes]
rs776741	0.89[CHB][hapmap]
rs776746	0.94[CHB][hapmap]
rs7808022	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv981555	chr7:99346675-99355848	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99350000-99355400	Weak transcription	Liver	Liver
2	chr7:99350800-99354200	Weak transcription	Esophagus	oesophagus
3	chr7:99350800-99357600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:99350800-99359800	Weak transcription	Fetal Lung	lung
5	chr7:99350800-99369800	Weak transcription	Pancreas	Pancrea
6	chr7:99351000-99364000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:99352800-99355600	Weak transcription	Aorta	Aorta

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