Variant report

Variant	rs35933222
Chromosome Location	chr13:30280181-30280182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12871145	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12876062	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17073796	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17073799	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17502383	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1831095	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34102821	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34177704	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34622544	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34953541	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35331003	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56044395	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61947179	1.00[AFR][1000 genomes]
rs66982000	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67704126	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73157103	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73157108	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7324224	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7992067	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7996713	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9579456	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9579458	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9579460	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30277400-30280600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:30277600-30280200	Enhancers	NHDF-Ad	bronchial
3	chr13:30277800-30280200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:30278800-30281600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:30278800-30283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:30279000-30281200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:30279000-30281800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:30279200-30281200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr13:30279200-30281600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:30279600-30280200	Weak transcription	Spleen	Spleen
11	chr13:30279600-30281600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:30279600-30281800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:30280000-30280400	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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