Variant report

Variant	rs9579456
Chromosome Location	chr13:30252831-30252832
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11841138	0.85[EUR][1000 genomes]
rs11841148	0.85[EUR][1000 genomes]
rs11841157	0.85[EUR][1000 genomes]
rs11843086	0.82[EUR][1000 genomes]
rs12864518	0.85[EUR][1000 genomes]
rs12871145	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12871787	0.82[EUR][1000 genomes]
rs12876062	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073796	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17073799	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1831095	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34102821	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34177704	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34203921	0.85[EUR][1000 genomes]
rs34622544	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34953541	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35331003	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35409650	0.85[EUR][1000 genomes]
rs35502883	0.82[EUR][1000 genomes]
rs35933222	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36018849	0.85[EUR][1000 genomes]
rs56044395	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66982000	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67704126	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73157108	0.83[AMR][1000 genomes]
rs7324224	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7992067	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7996713	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9579458	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579460	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30250000-30256400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30251400-30253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:30251400-30255800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:30251600-30253600	Weak transcription	Spleen	Spleen
5	chr13:30251800-30253000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:30252000-30253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:30252000-30253800	Enhancers	NHEK	skin
8	chr13:30252200-30254000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:30252200-30255800	Weak transcription	NHDF-Ad	bronchial
10	chr13:30252800-30257600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:30252800-30257800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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