Variant report

Variant	rs35502883
Chromosome Location	chr13:30248532-30248533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11838567	0.91[EUR][1000 genomes]
rs11840911	0.85[EUR][1000 genomes]
rs11841138	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11841148	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11841157	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11841439	0.85[EUR][1000 genomes]
rs11843086	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11843900	0.91[EUR][1000 genomes]
rs12860598	0.85[EUR][1000 genomes]
rs12864518	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12866053	0.85[EUR][1000 genomes]
rs12866393	0.85[EUR][1000 genomes]
rs12871787	0.93[EUR][1000 genomes]
rs12873225	0.91[EUR][1000 genomes]
rs12876062	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1576607	0.85[EUR][1000 genomes]
rs34177704	0.80[EUR][1000 genomes]
rs34203921	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34622544	0.82[EUR][1000 genomes]
rs34715453	0.85[EUR][1000 genomes]
rs34825298	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34953541	0.81[EUR][1000 genomes]
rs35243951	0.85[EUR][1000 genomes]
rs35253788	0.85[EUR][1000 genomes]
rs35331003	0.82[EUR][1000 genomes]
rs35409650	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36018849	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60013611	1.00[ASN][1000 genomes]
rs71434734	0.85[EUR][1000 genomes]
rs7987685	0.84[EUR][1000 genomes]
rs7992475	0.83[EUR][1000 genomes]
rs7993901	0.85[EUR][1000 genomes]
rs9579456	0.82[EUR][1000 genomes]
rs9579458	0.82[EUR][1000 genomes]
rs9579460	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30233800-30249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:30248200-30250200	Enhancers	Hela-S3	cervix
3	chr13:30248400-30248600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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