Variant report

Variant	rs11841439
Chromosome Location	chr13:30215221-30215222
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30214449..30216128-chr13:30220444..30222656,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11838567	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11840911	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841138	0.88[EUR][1000 genomes]
rs11841148	0.88[EUR][1000 genomes]
rs11841157	0.88[EUR][1000 genomes]
rs11843086	0.84[EUR][1000 genomes]
rs11843900	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12860598	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12864518	0.88[EUR][1000 genomes]
rs12866053	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866393	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12871787	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12873225	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1576607	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34203921	0.88[EUR][1000 genomes]
rs34715453	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34825298	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35243951	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35253788	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35409650	0.88[EUR][1000 genomes]
rs35502883	0.85[EUR][1000 genomes]
rs36018849	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36182222	0.91[AFR][1000 genomes]
rs71434734	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7987685	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7992475	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7993901	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528336	chr13:30194288-30226498	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv980	chr13:30200197-30236915	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3411311	chr13:30214552-30218450	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3422004	chr13:30214852-30223050	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2638055	chr13:30215014-30222317	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30214800-30215600	Enhancers	HUVEC	blood vessel

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