Variant report

Variant	rs34715453
Chromosome Location	chr13:30198731-30198732
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11838567	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11840911	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841138	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11841148	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11841157	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11841439	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11843086	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11843900	0.94[EUR][1000 genomes]
rs12860598	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12864518	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12866053	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12871787	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12873225	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1576607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34203921	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34825298	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34953541	0.95[AFR][1000 genomes]
rs35243951	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35253788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35409650	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35502883	0.85[EUR][1000 genomes]
rs36018849	0.88[EUR][1000 genomes]
rs71434734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7987685	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7992475	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7993901	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528336	chr13:30194288-30226498	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30195000-30198800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:30195800-30198800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:30197000-30199000	Weak transcription	Osteobl	bone
4	chr13:30198600-30199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links