Variant report

Variant	rs11841138
Chromosome Location	chr13:30242562-30242563
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11838567	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11840911	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11841148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841439	0.88[EUR][1000 genomes]
rs11843086	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11843900	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12860598	0.88[EUR][1000 genomes]
rs12864518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866053	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12866393	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12871787	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12873225	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12876062	0.85[EUR][1000 genomes]
rs1576607	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34177704	0.83[EUR][1000 genomes]
rs34203921	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34622544	0.85[EUR][1000 genomes]
rs34715453	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34825298	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34953541	0.83[EUR][1000 genomes]
rs35243951	0.88[EUR][1000 genomes]
rs35253788	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35331003	0.85[EUR][1000 genomes]
rs35409650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35502883	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36018849	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36182222	0.81[AMR][1000 genomes]
rs56044395	0.82[EUR][1000 genomes]
rs71434734	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7987685	0.87[EUR][1000 genomes]
rs7992475	0.86[EUR][1000 genomes]
rs7993901	0.88[EUR][1000 genomes]
rs9579456	0.85[EUR][1000 genomes]
rs9579458	0.85[EUR][1000 genomes]
rs9579460	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30233800-30249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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