Variant report

Variant	rs9579458
Chromosome Location	chr13:30258310-30258311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11840911	0.90[CEU][hapmap];0.89[GIH][hapmap]
rs11841138	0.85[EUR][1000 genomes]
rs11841148	0.85[EUR][1000 genomes]
rs11841157	0.85[EUR][1000 genomes]
rs11843086	0.82[EUR][1000 genomes]
rs12864518	0.85[EUR][1000 genomes]
rs12871145	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12871787	0.90[CEU][hapmap];0.89[GIH][hapmap];0.82[EUR][1000 genomes]
rs12876062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073796	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17073799	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1831095	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34102821	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34177704	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34203921	0.85[EUR][1000 genomes]
rs34622544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34953541	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35331003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35409650	0.85[EUR][1000 genomes]
rs35502883	0.82[EUR][1000 genomes]
rs35933222	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36018849	0.85[EUR][1000 genomes]
rs56044395	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66982000	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67704126	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73157103	0.86[AMR][1000 genomes]
rs73157108	0.83[AMR][1000 genomes]
rs7324224	0.83[CEU][hapmap];0.89[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7992067	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7996713	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9579456	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30255000-30262200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:30256200-30258400	Weak transcription	NHDF-Ad	bronchial
3	chr13:30256400-30258400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:30256400-30259800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:30257200-30259800	Enhancers	NHEK	skin
6	chr13:30257600-30258600	Weak transcription	HSMMtube	muscle
7	chr13:30257600-30259600	Enhancers	HSMM	muscle
8	chr13:30257600-30259800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:30257800-30259800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:30258000-30258400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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