Variant report

Variant	rs35955619
Chromosome Location	chr4:9918986-9918987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:9918331..9921142-chr4:10116868..10118418,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071127	Chromatin interaction
ENSG00000223086	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10000983	0.84[EUR][1000 genomes]
rs10001964	0.88[EUR][1000 genomes]
rs10017674	0.87[EUR][1000 genomes]
rs10018204	0.86[EUR][1000 genomes]
rs1079128	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10939636	0.85[EUR][1000 genomes]
rs1122142	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11724510	0.88[EUR][1000 genomes]
rs11937310	0.81[ASN][1000 genomes]
rs12498150	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12498956	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13103497	0.84[EUR][1000 genomes]
rs13125029	0.83[EUR][1000 genomes]
rs13145554	0.81[EUR][1000 genomes]
rs13328050	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17185835	0.88[EUR][1000 genomes]
rs17185870	0.87[EUR][1000 genomes]
rs17245436	0.88[EUR][1000 genomes]
rs17245723	0.87[EUR][1000 genomes]
rs2018643	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28480661	0.81[ASN][1000 genomes]
rs28513781	0.88[EUR][1000 genomes]
rs28602527	0.82[EUR][1000 genomes]
rs28610447	0.85[EUR][1000 genomes]
rs28613263	0.87[EUR][1000 genomes]
rs28715627	0.86[EUR][1000 genomes]
rs28837683	0.88[EUR][1000 genomes]
rs34297373	0.85[EUR][1000 genomes]
rs35954357	0.84[EUR][1000 genomes]
rs4235347	0.87[EUR][1000 genomes]
rs4235348	0.87[EUR][1000 genomes]
rs4276278	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4292332	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4292333	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4295261	0.87[EUR][1000 genomes]
rs4305511	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4306953	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4311316	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4312757	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4314284	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4339211	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4385058	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4407505	0.84[EUR][1000 genomes]
rs4447861	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4455410	0.88[EUR][1000 genomes]
rs4459990	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4466042	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4467563	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4467564	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4473653	0.86[EUR][1000 genomes]
rs4495037	0.87[EUR][1000 genomes]
rs4511996	0.81[ASN][1000 genomes]
rs4515163	0.88[EUR][1000 genomes]
rs4519796	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4560411	0.84[EUR][1000 genomes]
rs4580649	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4588456	0.87[EUR][1000 genomes]
rs4621431	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4627861	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4697696	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4697697	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4697914	0.87[EUR][1000 genomes]
rs56296130	0.83[EUR][1000 genomes]
rs57250714	0.84[EUR][1000 genomes]
rs57574512	0.88[EUR][1000 genomes]
rs58130873	0.86[EUR][1000 genomes]
rs60045583	0.85[EUR][1000 genomes]
rs62293333	0.83[ASN][1000 genomes]
rs62294328	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62294329	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62294331	0.88[EUR][1000 genomes]
rs62294332	0.88[EUR][1000 genomes]
rs6414766	0.87[EUR][1000 genomes]
rs6449154	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6449155	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6449157	0.88[EUR][1000 genomes]
rs6449158	0.88[EUR][1000 genomes]
rs6449159	0.88[EUR][1000 genomes]
rs6449165	0.82[EUR][1000 genomes]
rs6449166	0.87[EUR][1000 genomes]
rs6449167	0.87[EUR][1000 genomes]
rs6449171	0.87[EUR][1000 genomes]
rs6449172	0.87[EUR][1000 genomes]
rs6449174	0.87[EUR][1000 genomes]
rs6449176	0.87[EUR][1000 genomes]
rs6449178	0.86[EUR][1000 genomes]
rs6449179	0.85[EUR][1000 genomes]
rs6449201	0.86[EUR][1000 genomes]
rs6449202	0.86[EUR][1000 genomes]
rs67163329	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67820465	0.83[EUR][1000 genomes]
rs68107257	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6814664	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6815001	0.88[EUR][1000 genomes]
rs6823361	0.87[EUR][1000 genomes]
rs6834893	0.88[EUR][1000 genomes]
rs6836706	0.87[EUR][1000 genomes]
rs6837224	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6839490	0.87[EUR][1000 genomes]
rs6840802	0.87[EUR][1000 genomes]
rs6843873	0.88[EUR][1000 genomes]
rs6844316	0.88[EUR][1000 genomes]
rs6844787	0.88[EUR][1000 genomes]
rs6849729	0.88[EUR][1000 genomes]
rs6850143	0.88[EUR][1000 genomes]
rs6850684	0.88[EUR][1000 genomes]
rs6852441	0.86[EUR][1000 genomes]
rs6856127	0.87[EUR][1000 genomes]
rs73098626	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7375587	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7375642	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7376505	0.88[EUR][1000 genomes]
rs7376948	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7377578	0.88[EUR][1000 genomes]
rs7377625	0.86[EUR][1000 genomes]
rs7378305	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7378340	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7435196	0.85[EUR][1000 genomes]
rs7437120	0.83[EUR][1000 genomes]
rs7658170	0.87[EUR][1000 genomes]
rs7663097	0.86[EUR][1000 genomes]
rs7672947	0.88[EUR][1000 genomes]
rs7676733	0.87[EUR][1000 genomes]
rs7677710	0.86[EUR][1000 genomes]
rs7683283	0.86[EUR][1000 genomes]
rs7684306	0.84[EUR][1000 genomes]
rs7686538	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7694997	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7699609	0.87[EUR][1000 genomes]
rs881971	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs938553	0.83[ASN][1000 genomes]
rs9993410	0.81[ASN][1000 genomes]
rs9994266	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9994937	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878672	chr4:9786732-10008305	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv878676	chr4:9797703-9978094	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv878677	chr4:9797703-10008305	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1007593	chr4:9802146-9956285	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
10	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
11	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
12	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
13	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
14	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
16	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
17	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
18	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	nsv1004311	chr4:9825814-9978414	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv998425	chr4:9834666-9961280	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv878684	chr4:9863698-9998440	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv878686	chr4:9893403-10008305	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
25	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
26	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
27	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
28	nsv527211	chr4:9912101-9944650	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
29	nsv878687	chr4:9912101-10008305	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9897000-9924600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:9903400-9923200	Strong transcription	HepG2	liver
3	chr4:9903600-9928600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr4:9903600-9929000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr4:9907200-9919400	Weak transcription	Esophagus	oesophagus
6	chr4:9907400-9923200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:9908000-9943000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:9911400-9919400	Weak transcription	Aorta	Aorta
9	chr4:9911400-9920200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:9911400-9979800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:9914200-9926000	Weak transcription	Spleen	Spleen
12	chr4:9914400-9919400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:9914400-9922800	Strong transcription	HMEC	breast
14	chr4:9915400-9928000	Strong transcription	Fetal Intestine Small	intestine
15	chr4:9916000-9919600	Weak transcription	Fetal Intestine Large	intestine
16	chr4:9916000-9921200	Strong transcription	Liver	Liver
17	chr4:9917000-9922600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:9917400-9919600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:9917400-9923400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:9918000-9920400	Enhancers	Right Atrium	heart
21	chr4:9918200-9919200	Weak transcription	NHEK	skin
22	chr4:9918400-9919800	Enhancers	Fetal Muscle Trunk	muscle
23	chr4:9918600-9948600	Weak transcription	Pancreas	Pancrea
24	chr4:9918800-9919400	Weak transcription	Right Ventricle	heart
25	chr4:9918800-9919800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr4:9918800-9920000	Weak transcription	Lung	lung
27	chr4:9918800-9920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:9918800-9921200	Weak transcription	Left Ventricle	heart

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