Variant report

Variant	rs35972516
Chromosome Location	chr12:26040023-26040024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12422269	0.92[EUR][1000 genomes]
rs12427059	0.92[EUR][1000 genomes]
rs12812530	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12824703	0.92[EUR][1000 genomes]
rs12831978	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2342372	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34253073	0.89[EUR][1000 genomes]
rs34704732	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34810288	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35070061	0.83[EUR][1000 genomes]
rs35642650	0.88[EUR][1000 genomes]
rs66485863	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67234620	0.90[AFR][1000 genomes]
rs67678522	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73084200	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73086129	0.92[EUR][1000 genomes]
rs73086133	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73088119	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26037200-26042400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:26037800-26040800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:26038000-26042400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:26038200-26042600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:26038400-26043000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:26038800-26040600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr12:26038800-26042000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:26039000-26043600	Weak transcription	HMEC	breast
9	chr12:26039200-26040600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:26039200-26043600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:26039200-26044400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:26039400-26040200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:26039400-26040600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:26039400-26041000	Weak transcription	Fetal Brain Female	brain
15	chr12:26039600-26040200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr12:26039600-26040600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:26039600-26040600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr12:26039600-26040600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:26040000-26041200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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