Variant report
Variant | rs66485863 |
---|---|
Chromosome Location | chr12:26002740-26002741 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12422269 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12427059 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12812530 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12824703 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12831978 | 0.96[EUR][1000 genomes] |
rs2342372 | 0.96[EUR][1000 genomes] |
rs34253073 | 1.00[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs34704732 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs34810288 | 0.96[EUR][1000 genomes] |
rs35008815 | 1.00[AFR][1000 genomes] |
rs35070061 | 0.85[EUR][1000 genomes] |
rs35642650 | 1.00[AFR][1000 genomes];0.96[EUR][1000 genomes] |
rs35972516 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs56366747 | 0.83[AMR][1000 genomes] |
rs67678522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs73084200 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73086129 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
rs73086133 | 0.98[EUR][1000 genomes] |
rs73088119 | 0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2758300 | chr12:25992331-26161116 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 38 gene(s) | inside rSNPs | diseases |
2 | esv2759886 | chr12:25992331-26161116 | Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 38 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:25997200-26003800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |