Variant report

Variant	rs35008815
Chromosome Location	chr12:25993579-25993580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12422269	1.00[AFR][1000 genomes]
rs12427059	1.00[AFR][1000 genomes]
rs12812530	1.00[AFR][1000 genomes]
rs12824703	1.00[AFR][1000 genomes]
rs34253073	1.00[AFR][1000 genomes]
rs35642650	1.00[AFR][1000 genomes]
rs66485863	1.00[AFR][1000 genomes]
rs67234620	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67678522	1.00[AFR][1000 genomes]
rs73080367	1.00[ASN][1000 genomes]
rs73080397	1.00[ASN][1000 genomes]
rs73084200	0.81[AFR][1000 genomes]
rs73086129	1.00[AFR][1000 genomes]
rs73086143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25981800-25996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:25987200-25993800	Weak transcription	NHDF-Ad	bronchial
3	chr12:25988800-25997800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:25991400-25996200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:25991400-25996400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr12:25992000-25993800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:25992200-25994200	Enhancers	HUVEC	blood vessel
8	chr12:25992200-25994400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr12:25992400-25993800	Enhancers	Osteobl	bone
10	chr12:25992600-25994200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:25992600-25994600	Enhancers	NH-A	brain
12	chr12:25993000-25994200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr12:25993400-25994400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:25993400-25996000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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