Variant report

Variant	rs73080367
Chromosome Location	chr12:25847724-25847725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35008815	1.00[ASN][1000 genomes]
rs55770090	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73080397	1.00[ASN][1000 genomes]
rs73086143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832354	chr12:25785145-25982021	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25845200-25848400	Weak transcription	Fetal Lung	lung
2	chr12:25845400-25849000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:25845400-25849400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:25845800-25848200	Weak transcription	Fetal Kidney	kidney
5	chr12:25846000-25848400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr12:25846000-25851200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:25846200-25848800	Enhancers	Hela-S3	cervix
8	chr12:25847200-25848000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:25847200-25849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:25847400-25847800	Enhancers	Brain Substantia Nigra	brain
11	chr12:25847600-25848200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:25847600-25848800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:25847600-25850800	Weak transcription	HUVEC	blood vessel
14	chr12:25847600-25851600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:25847600-25851800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:25847600-25851800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr12:25847600-25851800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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