Variant report

Variant	rs55770090
Chromosome Location	chr12:25850940-25850941
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73080367	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73080397	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832354	chr12:25785145-25982021	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25846000-25851200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:25847600-25851600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:25847600-25851800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:25847600-25851800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:25847600-25851800	Weak transcription	NHDF-Ad	bronchial
6	chr12:25848800-25852400	Weak transcription	Hela-S3	cervix
7	chr12:25849800-25851800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:25850400-25852200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:25850800-25851200	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:25850800-25851200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr12:25850800-25851400	Enhancers	HUVEC	blood vessel
12	chr12:25850800-25852200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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