Variant report

Variant	rs73080397
Chromosome Location	chr12:25876215-25876216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35008815	1.00[ASN][1000 genomes]
rs55770090	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73080367	1.00[ASN][1000 genomes]
rs73086143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832354	chr12:25785145-25982021	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25871200-25876400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:25873000-25876400	Weak transcription	Fetal Lung	lung
3	chr12:25875800-25878600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:25876000-25876600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:25876000-25876600	Enhancers	Right Atrium	heart
6	chr12:25876000-25876800	Enhancers	Colon Smooth Muscle	Colon
7	chr12:25876000-25877400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:25876000-25877600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr12:25876000-25878200	Enhancers	Fetal Muscle Leg	muscle
10	chr12:25876000-25879400	Enhancers	NHDF-Ad	bronchial
11	chr12:25876000-25879400	Enhancers	NHLF	lung
12	chr12:25876200-25876600	Enhancers	Placenta	Placenta
13	chr12:25876200-25876800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:25876200-25876800	Enhancers	Brain Substantia Nigra	brain
15	chr12:25876200-25879000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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