Variant report

Variant	rs73088119
Chromosome Location	chr12:26037570-26037571
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10842632	0.97[ASN][1000 genomes]
rs11048327	0.97[ASN][1000 genomes]
rs11048332	0.99[ASN][1000 genomes]
rs11048333	0.96[ASN][1000 genomes]
rs11048334	0.97[ASN][1000 genomes]
rs11048335	0.91[ASN][1000 genomes]
rs12422269	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12427059	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12812530	0.96[EUR][1000 genomes]
rs12816906	0.99[ASN][1000 genomes]
rs12817333	0.98[ASN][1000 genomes]
rs12824703	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12831978	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2342372	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34253073	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34704732	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34810288	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34878109	0.99[ASN][1000 genomes]
rs35070061	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35642650	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35972516	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs66485863	0.96[EUR][1000 genomes]
rs67234620	1.00[AFR][1000 genomes]
rs67678522	0.96[EUR][1000 genomes]
rs73084200	0.96[EUR][1000 genomes]
rs73086129	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73086133	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26036600-26037800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:26037000-26037600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:26037200-26042400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26037400-26038400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:26037400-26039400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:26037400-26039600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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