Variant report

Variant	rs35972679
Chromosome Location	chr4:21639200-21639201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10021380	0.92[ASN][1000 genomes]
rs10516394	0.92[ASN][1000 genomes]
rs1105376	0.87[ASN][1000 genomes]
rs1105377	0.87[ASN][1000 genomes]
rs1105378	0.87[ASN][1000 genomes]
rs12508153	0.80[ASN][1000 genomes]
rs13146325	0.82[ASN][1000 genomes]
rs13146424	0.82[ASN][1000 genomes]
rs1503993	0.84[ASN][1000 genomes]
rs1503994	0.84[ASN][1000 genomes]
rs17486399	0.84[ASN][1000 genomes]
rs17559457	0.90[ASN][1000 genomes]
rs1847424	0.80[ASN][1000 genomes]
rs1910524	0.80[ASN][1000 genomes]
rs1910526	0.84[ASN][1000 genomes]
rs2221380	0.87[ASN][1000 genomes]
rs34275287	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34413196	0.85[ASN][1000 genomes]
rs34488331	0.92[ASN][1000 genomes]
rs35149530	0.85[ASN][1000 genomes]
rs35310146	0.84[ASN][1000 genomes]
rs35433933	0.84[ASN][1000 genomes]
rs4572864	0.84[ASN][1000 genomes]
rs4572865	0.84[ASN][1000 genomes]
rs56069015	0.87[ASN][1000 genomes]
rs6448061	0.84[ASN][1000 genomes]
rs7657068	0.87[ASN][1000 genomes]
rs7683386	0.84[ASN][1000 genomes]
rs871500	0.87[ASN][1000 genomes]
rs9291428	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21638800-21640200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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