Variant report

Variant	rs1847424
Chromosome Location	chr4:21625311-21625312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10021380	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1021862	0.86[CHB][hapmap]
rs10516394	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10938847	1.00[CHB][hapmap]
rs10938851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1105376	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1105377	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1105378	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11728537	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11935160	0.86[CHB][hapmap]
rs12505463	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12508153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110918	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs13146325	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13146424	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1394137	1.00[CHB][hapmap]
rs1394139	1.00[JPT][hapmap]
rs1503993	0.96[ASN][1000 genomes]
rs1503994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17485934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17486399	0.96[ASN][1000 genomes]
rs17487317	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17551181	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17557643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17559457	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1814167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1827595	1.00[JPT][hapmap]
rs1910524	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1910526	0.96[ASN][1000 genomes]
rs2221380	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34413196	0.81[ASN][1000 genomes]
rs34488331	0.88[ASN][1000 genomes]
rs35149530	0.81[ASN][1000 genomes]
rs35310146	0.96[ASN][1000 genomes]
rs35433933	0.96[ASN][1000 genomes]
rs35823075	0.86[ASN][1000 genomes]
rs358836	0.86[CHB][hapmap]
rs35972679	0.80[ASN][1000 genomes]
rs3913663	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4572864	0.96[ASN][1000 genomes]
rs4572865	0.96[ASN][1000 genomes]
rs56069015	0.83[ASN][1000 genomes]
rs6448061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6832481	0.87[YRI][hapmap]
rs7657068	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7661478	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7664902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7665351	0.86[CHB][hapmap]
rs7675686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7683386	0.96[ASN][1000 genomes]
rs7684272	0.86[CHB][hapmap]
rs871500	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9291428	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21609400-21628000	Weak transcription	Ovary	ovary
2	chr4:21624000-21627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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