Variant report

Variant	rs358836
Chromosome Location	chr4:21582589-21582590
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1021862	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10938844	0.92[CEU][hapmap];0.81[MEX][hapmap]
rs10938847	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10938851	0.86[CHB][hapmap]
rs11728537	0.86[CHB][hapmap]
rs11935160	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs11943551	0.85[CEU][hapmap]
rs11947661	0.92[CEU][hapmap]
rs12505463	1.00[CHB][hapmap];0.96[YRI][hapmap]
rs12644013	0.88[CEU][hapmap]
rs13133651	0.84[CEU][hapmap]
rs1380812	0.96[CEU][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs1394137	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs1460472	0.89[EUR][1000 genomes]
rs1503994	0.86[CHB][hapmap]
rs17485934	0.86[CHB][hapmap]
rs17551181	1.00[CHB][hapmap]
rs17557643	0.86[CHB][hapmap]
rs1814167	0.86[CHB][hapmap]
rs1824472	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1847424	0.86[CHB][hapmap]
rs1910525	0.86[CHB][hapmap]
rs2199286	0.85[CEU][hapmap]
rs2202313	0.81[CEU][hapmap]
rs2323068	1.00[JPT][hapmap]
rs2874950	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3913663	0.86[CHB][hapmap]
rs6448057	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6448061	0.86[CHB][hapmap]
rs6448063	0.89[ASW][hapmap];0.89[CEU][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap]
rs6812187	0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6828989	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6832481	0.81[MEX][hapmap]
rs7655166	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7661478	0.86[CHB][hapmap]
rs7664902	0.86[CHB][hapmap]
rs7665351	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7675686	0.86[CHB][hapmap]
rs7684272	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs972288	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs358836	FAM184B	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21580600-21584400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:21581600-21582800	Enhancers	Fetal Heart	heart
3	chr4:21582200-21582800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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