Variant report

Variant	rs12505463
Chromosome Location	chr4:21576943-21576944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10021380	1.00[JPT][hapmap]
rs10516394	1.00[JPT][hapmap]
rs10938847	0.86[CHB][hapmap]
rs10938851	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1105376	0.85[EUR][1000 genomes]
rs1105377	0.87[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1105378	0.85[EUR][1000 genomes]
rs11728537	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12508153	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13110918	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs13146325	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13146424	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1394137	0.86[CHB][hapmap]
rs1394139	1.00[JPT][hapmap]
rs1503993	0.84[ASN][1000 genomes]
rs1503994	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17485934	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17486399	0.84[ASN][1000 genomes]
rs17487317	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17551181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17557643	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17559457	1.00[JPT][hapmap]
rs1814167	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1827595	1.00[JPT][hapmap]
rs1847424	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910524	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910525	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1910526	0.84[ASN][1000 genomes]
rs2221380	0.85[EUR][1000 genomes]
rs34413196	0.85[ASN][1000 genomes]
rs35149530	0.81[ASN][1000 genomes]
rs35310146	0.84[ASN][1000 genomes]
rs35433933	0.84[ASN][1000 genomes]
rs35823075	0.87[ASN][1000 genomes]
rs358836	1.00[CHB][hapmap];0.96[YRI][hapmap]
rs3913663	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4572864	0.84[ASN][1000 genomes]
rs4572865	0.84[ASN][1000 genomes]
rs56069015	0.83[ASN][1000 genomes]
rs6448061	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7657068	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7661478	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7664902	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7675686	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7683386	0.84[ASN][1000 genomes]
rs871500	0.85[EUR][1000 genomes]
rs9291428	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1001219	chr4:21518045-21580423	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
6	esv2760860	chr4:21518045-21580435	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	nsv593808	chr4:21566178-21577089	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21571400-21577600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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