Variant report

Variant	rs13146424
Chromosome Location	chr4:21628988-21628989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10021380	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1021862	0.86[CHB][hapmap]
rs10516394	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10938847	0.86[CHB][hapmap]
rs10938851	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1105376	0.88[ASN][1000 genomes]
rs1105377	0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1105378	0.88[ASN][1000 genomes]
rs11728537	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11935160	1.00[CHB][hapmap]
rs12505463	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12508153	0.94[ASN][1000 genomes]
rs13110918	1.00[JPT][hapmap]
rs13146325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394137	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs1394139	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs1460473	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1503993	0.98[ASN][1000 genomes]
rs1503994	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17485934	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17486399	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17487317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17549122	0.85[EUR][1000 genomes]
rs17551181	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17557643	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]
rs17559457	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1814167	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1827595	1.00[JPT][hapmap]
rs1847424	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1910524	0.94[ASN][1000 genomes]
rs1910525	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1910526	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2221380	0.88[ASN][1000 genomes]
rs28636012	0.85[EUR][1000 genomes]
rs34413196	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34488331	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35149530	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35310146	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35433933	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35709055	0.87[EUR][1000 genomes]
rs35823075	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs358839	0.82[CEU][hapmap]
rs35972679	0.82[ASN][1000 genomes]
rs3913663	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4572864	0.98[ASN][1000 genomes]
rs4572865	0.98[ASN][1000 genomes]
rs56069015	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6448061	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6448063	0.88[CHD][hapmap]
rs7657068	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7661478	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7664902	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7665351	0.86[CHB][hapmap]
rs7675686	0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7683386	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7684272	0.86[CHB][hapmap]
rs871500	0.88[ASN][1000 genomes]
rs9291428	0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21627200-21629000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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