Variant report

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10002031	0.86[YRI][hapmap]
rs10012513	0.88[YRI][hapmap]
rs1021862	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10938844	0.85[CEU][hapmap]
rs10938847	0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10938851	0.86[CHB][hapmap]
rs1105377	0.88[CHB][hapmap];0.87[YRI][hapmap]
rs11728537	0.86[CHB][hapmap]
rs11947661	0.86[CEU][hapmap]
rs13110918	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs13146325	1.00[CHB][hapmap]
rs13146424	1.00[CHB][hapmap]
rs1380812	0.89[CEU][hapmap]
rs1394137	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1503979	1.00[YRI][hapmap]
rs1503994	0.86[CHB][hapmap]
rs17485934	0.86[CHB][hapmap]
rs17487317	1.00[CHB][hapmap];0.84[YRI][hapmap]
rs17557643	0.86[CHB][hapmap]
rs17559457	0.88[CHB][hapmap]
rs1814167	0.86[CHB][hapmap]
rs1824472	0.89[CEU][hapmap]
rs1847424	0.86[CHB][hapmap]
rs1910525	0.86[CHB][hapmap]
rs2323068	0.88[JPT][hapmap]
rs2874950	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs358836	0.84[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3913663	0.86[CHB][hapmap]
rs6448057	0.89[CEU][hapmap]
rs6448061	0.86[CHB][hapmap]
rs6448063	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6812187	0.89[JPT][hapmap]
rs6828989	0.89[JPT][hapmap]
rs6832481	0.83[YRI][hapmap]
rs7655166	0.93[CEU][hapmap]
rs7661478	0.86[CHB][hapmap]
rs7664902	0.86[CHB][hapmap]
rs7665351	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs7675686	0.86[CHB][hapmap]
rs7684272	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs9291428	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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