Variant report

Variant	rs10002031
Chromosome Location	chr4:21635337-21635338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10012513	0.95[YRI][hapmap]
rs10021380	0.94[ASN][1000 genomes]
rs10516394	0.94[ASN][1000 genomes]
rs1105376	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105377	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105378	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935160	0.86[YRI][hapmap]
rs12505463	0.84[EUR][1000 genomes]
rs12508153	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13110918	0.82[YRI][hapmap]
rs13146325	0.88[ASN][1000 genomes]
rs13146424	0.88[ASN][1000 genomes]
rs1503979	0.86[YRI][hapmap]
rs1503993	0.87[ASN][1000 genomes]
rs1503994	0.87[ASN][1000 genomes]
rs17486399	0.87[ASN][1000 genomes]
rs17487317	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17551181	0.81[ASN][1000 genomes]
rs17559457	0.96[ASN][1000 genomes]
rs1847424	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1910524	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1910526	0.87[ASN][1000 genomes]
rs2221380	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34413196	0.87[ASN][1000 genomes]
rs34488331	0.94[ASN][1000 genomes]
rs35149530	0.87[ASN][1000 genomes]
rs35310146	0.87[ASN][1000 genomes]
rs35433933	0.87[ASN][1000 genomes]
rs35709055	0.81[ASN][1000 genomes]
rs35972679	0.87[ASN][1000 genomes]
rs4572864	0.87[ASN][1000 genomes]
rs4572865	0.87[ASN][1000 genomes]
rs56069015	0.89[ASN][1000 genomes]
rs6448061	0.87[ASN][1000 genomes]
rs7657068	0.89[ASN][1000 genomes]
rs7675686	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7683386	0.87[ASN][1000 genomes]
rs871500	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291428	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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